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clustalw multiple alignment accessory application  (Bioedit Company)

 
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    Structured Review

    Bioedit Company clustalw multiple alignment accessory application
    Clustalw Multiple Alignment Accessory Application, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/clustalw+multiple+alignment+application/accessory+alignment+application+clustalw+multiple/pm41692796-197-15-23
    Average 86 stars, based on 1 article reviews
    clustalw multiple alignment accessory application - by Bioz Stars, 2026-10
    86/100 stars

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    Selection:

    Article Title: Purifying selection of the lysosomal enzymes arylsulfatase A and beta-galactocerebrosidase and their evolutionary impact on myelin integrity
    Article Snippet: .. One hundred five ARSA sequences were chosen, after a strict selection using the ClustalW Multiple alignment application on BioEdit program ( ) with manual adjustment and according to length and similarity. ..

    Sequencing:

    Article Title: In Silico Three-Dimensional (3D) Modeling of the SecY Protein of ‘Candidatus Phytoplasma Solani’ Strains Associated with Grapevine “Bois Noir” and Its Possible Relationship with Strain Virulence
    Article Snippet: SecY amplicons were sequenced in both strands (Sanger method) by a commercial service (Eurofins Genomics, Germany) and assembled by Contig Assembling Program of the software BioEdit 7.2.6 [26]. .. The nucleotide sequences identified in this study were trimmed to the annealing sites of the primers SecYF2a and SecYR1(XII), aligned by the ClustalW Multiple Alignment application, and searched for sequence identity by the Sequence Identity Matrix application of the software BioEdit. ..

    Article Title: Declinación de la vid en Túnez asociada a hongos de las familias Diaporthaceae y Botryosphaeriaceae
    Article Snippet: .. Sequences from the database were aligned by ClustalW Multiple Alignment application, and the obtained alignment was analyzed by a Sequence Identity Matrix application of the software BioEdit to define the species affiliation of the isolated fungal strains based on sequence identity percentage in comparison with reference fungi (Table 1 and Supplementary Material). ..

    Article Title: Peach witches’-broom, an emerging disease associated with ‘Candidatus Phytoplasma phoenicium’ and ‘Candidatus Phytoplasma aurantifolia’ in Iran
    Article Snippet: For each PCR product, plasmid DNA from three recombinant colonies was purified using GF-1 PCR Clean-Up Kit (Vivantis, Malaysia), according to the manufacturer’s instructions, and the cloned F2n/R2 fragment was sequenced by a commercial DNA sequencing service (BioNeer, South Korea). .. The 16S rDNA nucleotide sequences were assembled using the “Contig Assembling” application, trimmed to the annealing sites of the primers F2n and R2, aligned using the “ClustalW Multiple Alignment” application, and analyzed for sequence similarity determination using the “Sequence Identity Matrix” application of the software BioEdit version 7.0.5 (Hall, 1999). ..

    Software:

    Article Title: In Silico Three-Dimensional (3D) Modeling of the SecY Protein of ‘Candidatus Phytoplasma Solani’ Strains Associated with Grapevine “Bois Noir” and Its Possible Relationship with Strain Virulence
    Article Snippet: SecY amplicons were sequenced in both strands (Sanger method) by a commercial service (Eurofins Genomics, Germany) and assembled by Contig Assembling Program of the software BioEdit 7.2.6 [26]. .. The nucleotide sequences identified in this study were trimmed to the annealing sites of the primers SecYF2a and SecYR1(XII), aligned by the ClustalW Multiple Alignment application, and searched for sequence identity by the Sequence Identity Matrix application of the software BioEdit. ..

    Article Title: First Molecular Characterization of Theileria equi from Northeastern Algeria.
    Article Snippet: and Rodentia [2].. Humans are not affected by this disease [3].. Recently, a new species, Theileria haneyi, was identified in horses at the US-Mexico Border [4].

    Article Title: Declinación de la vid en Túnez asociada a hongos de las familias Diaporthaceae y Botryosphaeriaceae
    Article Snippet: .. Sequences from the database were aligned by ClustalW Multiple Alignment application, and the obtained alignment was analyzed by a Sequence Identity Matrix application of the software BioEdit to define the species affiliation of the isolated fungal strains based on sequence identity percentage in comparison with reference fungi (Table 1 and Supplementary Material). ..

    Article Title: Multilocus Genotyping Reveals New Molecular Markers for Differentiating Distinct Genetic Lineages among “ Candidatus Phytoplasma Solani” Strains Associated with Grapevine Bois Noir
    Article Snippet: Nucleotide sequences were compiled in FASTA format, assembled by employing the Contig Assembling Program of the software BioEdit version 7.2 [ ], and trimmed to the annealing sites of the related primers utilized by the nested PCRs. .. For each genomic fragment under study, nucleotide sequences were aligned using the ClustalW Multiple Alignment application within the software BioEdit, and single nucleotide polymorphisms (SNPs), restriction enzymatic sites, and deduced amino acid substitution were searched for. .. Phylogenetic trees were established by aligning the nucleotide sequences of tufB , hlyC , glyA , truB , and tyrS genes of CaPsol strains representing genetic lineages identified in this study and those of available phytoplasma strains in National Center for Biotechnology Information (NCBI) GenBank.

    Article Title: Peach witches’-broom, an emerging disease associated with ‘Candidatus Phytoplasma phoenicium’ and ‘Candidatus Phytoplasma aurantifolia’ in Iran
    Article Snippet: For each PCR product, plasmid DNA from three recombinant colonies was purified using GF-1 PCR Clean-Up Kit (Vivantis, Malaysia), according to the manufacturer’s instructions, and the cloned F2n/R2 fragment was sequenced by a commercial DNA sequencing service (BioNeer, South Korea). .. The 16S rDNA nucleotide sequences were assembled using the “Contig Assembling” application, trimmed to the annealing sites of the primers F2n and R2, aligned using the “ClustalW Multiple Alignment” application, and analyzed for sequence similarity determination using the “Sequence Identity Matrix” application of the software BioEdit version 7.0.5 (Hall, 1999). ..

    Isolation:

    Article Title: Declinación de la vid en Túnez asociada a hongos de las familias Diaporthaceae y Botryosphaeriaceae
    Article Snippet: .. Sequences from the database were aligned by ClustalW Multiple Alignment application, and the obtained alignment was analyzed by a Sequence Identity Matrix application of the software BioEdit to define the species affiliation of the isolated fungal strains based on sequence identity percentage in comparison with reference fungi (Table 1 and Supplementary Material). ..

    Comparison:

    Article Title: Declinación de la vid en Túnez asociada a hongos de las familias Diaporthaceae y Botryosphaeriaceae
    Article Snippet: .. Sequences from the database were aligned by ClustalW Multiple Alignment application, and the obtained alignment was analyzed by a Sequence Identity Matrix application of the software BioEdit to define the species affiliation of the isolated fungal strains based on sequence identity percentage in comparison with reference fungi (Table 1 and Supplementary Material). ..

    Genomic Sequencing:

    Article Title: Complete genome analysis demonstrates multiple introductions of enterovirus 71 and coxsackievirus A16 recombinant strains into Thailand during the past decade
    Article Snippet: .. The genomic sequences were aligned with the prototypes and the oldest available strains of the species Enterovirus A (EV-A) using the ClustalW multiple alignment application in BioEdit. ..

    Bacteria:

    Article Title: Clinical course of sly syndrome (mucopolysaccharidosis type VII)
    Article Snippet: .. Multiple amino acid alignment of GUS sequences from human, chimpanzee, cow, pig, dog, mouse, rat, chicken, frog, fruit fly, mosquito, honey bee, red flour beetle, Gram-positive bacteria and enterobacteria was constructed by using ClustalW Multiple alignment application on BioEdit program with manual adjustment. ..

    Construct:

    Article Title: Clinical course of sly syndrome (mucopolysaccharidosis type VII)
    Article Snippet: .. Multiple amino acid alignment of GUS sequences from human, chimpanzee, cow, pig, dog, mouse, rat, chicken, frog, fruit fly, mosquito, honey bee, red flour beetle, Gram-positive bacteria and enterobacteria was constructed by using ClustalW Multiple alignment application on BioEdit program with manual adjustment. ..



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